Please use this identifier to cite or link to this item: https://hdl.handle.net/20.500.12104/67000
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dc.contributor.authorMartinez-Alcantara, A.
dc.contributor.authorBallesteros, E.
dc.contributor.authorFeng, C.
dc.contributor.authorRojas, M.
dc.contributor.authorKoshinsky, H.
dc.contributor.authorFofanov, V.Y.
dc.contributor.authorHavlak, P.
dc.contributor.authorFofanov, Y.
dc.date.accessioned2015-11-19T18:51:47Z-
dc.date.available2015-11-19T18:51:47Z-
dc.date.issued2009
dc.identifier.urihttp://hdl.handle.net/20.500.12104/67000-
dc.description.abstractPIQA is a quality analysis pipeline designed to examine genomic reads produced by Next Generation Sequencing technology (Illumina G1 Genome Analyzer). A short statistical summary, as well as tile-by-tile and cycle-by-cycle graphical representation of clusters density, quality scores and nucleotide frequencies allow easy identification of various technical problems including defective tiles, mistakes in sample/library preparations and abnormalities in the frequencies of appearance of sequenced genomic reads. PIQA is written in the R statistical programming language and is compatible with bustard, fastq and scarf Illumina G1 Genome Analyzer data formats. © 2009 The Author(s).
dc.titlePIQA: Pipeline for Illumina G1 genome analyzer data quality assessment
dc.typeArticle
dc.identifier.doi10.1093/bioinformatics/btp429
dc.relation.ispartofjournalBioinformatics
dc.relation.ispartofvolume25
dc.relation.ispartofissue18
dc.relation.ispartofpage2438
dc.relation.ispartofpage2439
dc.contributor.affiliationMartínez-Alcántara, A., Department of Computer Science, University of Houston, Houston, TX, United States; Ballesteros, E., Department of Computer Science, University of Houston, Houston, TX, United States, Department of Physics, Universidad de Guadalajara, Jalisco, Mexico; Feng, C., Department of Computer Science, University of Houston, Houston, TX, United States; Rojas, M., Department of Computer Science, University of Houston, Houston, TX, United States; Koshinsky, H., Eureka Genomics Corp., Houston, TX, United States; Fofanov, V.Y., Eureka Genomics Corp., Houston, TX, United States; Havlak, P., Department of Computer Science, University of Houston, Houston, TX, United States; Fofanov, Y., Department of Computer Science, University of Houston, Houston, TX, United States
dc.relation.isReferencedByScopus
dc.relation.isReferencedByWOS
dc.identifier.urlhttp://www.scopus.com/inward/record.url?eid=2-s2.0-69849115727&partnerID=40&md5=7febafc067889d2cb0e8fb8c5dbcbfbd
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